Variant report

Variant	rs7146776
Chromosome Location	chr14:35412361-35412362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10130069	0.81[EUR][1000 genomes]
rs10134914	0.85[EUR][1000 genomes]
rs10144430	0.81[EUR][1000 genomes]
rs12433497	0.96[ASN][1000 genomes]
rs12587988	0.82[ASN][1000 genomes]
rs1568200	0.86[EUR][1000 genomes]
rs2273157	0.81[EUR][1000 genomes]
rs28384418	0.81[EUR][1000 genomes]
rs3885855	0.86[EUR][1000 genomes]
rs58342373	0.98[ASN][1000 genomes]
rs61988055	0.81[ASN][1000 genomes]
rs61988056	0.83[ASN][1000 genomes]
rs61988057	0.84[ASN][1000 genomes]
rs7141261	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv901603	chr14:35371697-35435651	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv901604	chr14:35381137-35485748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
12	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	esv1802718	chr14:35400075-35429777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1035925	chr14:35404661-35483420	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
15	nsv901605	chr14:35409214-35512335	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35390000-35412600	Weak transcription	Ovary	ovary
2	chr14:35394600-35424000	Weak transcription	Fetal Lung	lung
3	chr14:35396400-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:35396600-35424800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:35397200-35412800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:35397800-35420600	Weak transcription	Thymus	Thymus
7	chr14:35400600-35427000	Weak transcription	Primary B cells from cord blood	blood
8	chr14:35401000-35421400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:35401000-35428800	Weak transcription	GM12878-XiMat	blood
10	chr14:35401000-35440400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:35401400-35412600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr14:35401400-35428800	Weak transcription	Stomach Mucosa	stomach
13	chr14:35402800-35412600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:35403000-35423800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:35403200-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:35403600-35425200	Weak transcription	Gastric	stomach
17	chr14:35405800-35412800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:35406200-35412600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:35407000-35425000	Weak transcription	Spleen	Spleen
20	chr14:35408200-35425400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:35409000-35419000	Weak transcription	Liver	Liver
22	chr14:35409800-35412600	Weak transcription	HepG2	liver
23	chr14:35410000-35420600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:35410000-35425200	Weak transcription	Right Ventricle	heart
25	chr14:35411000-35434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr14:35411400-35414400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:35411800-35412600	Weak transcription	Primary T cells from cord blood	blood
28	chr14:35411800-35450000	Weak transcription	Brain Angular Gyrus	brain
29	chr14:35412200-35412400	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr14:35412200-35412600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:35412200-35412600	ZNF genes & repeats	Fetal Stomach	stomach
32	chr14:35412200-35413000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
33	chr14:35412200-35413200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr14:35412200-35413400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
35	chr14:35412200-35413400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:35412200-35414600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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