Variant report

Variant	rs71418547
Chromosome Location	chr2:116046164-116046165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12619497	0.86[EUR][1000 genomes]
rs12988978	0.83[EUR][1000 genomes]
rs13005522	0.89[EUR][1000 genomes]
rs13018318	0.89[EUR][1000 genomes]
rs13018346	0.89[EUR][1000 genomes]
rs13027054	0.89[EUR][1000 genomes]
rs13027383	0.89[EUR][1000 genomes]
rs17044243	0.89[EUR][1000 genomes]
rs34168937	0.83[EUR][1000 genomes]
rs34195762	0.89[EUR][1000 genomes]
rs34423273	0.89[EUR][1000 genomes]
rs34777388	0.89[EUR][1000 genomes]
rs34787934	0.83[EUR][1000 genomes]
rs34911120	0.89[EUR][1000 genomes]
rs34938977	0.89[EUR][1000 genomes]
rs35363264	0.86[EUR][1000 genomes]
rs35672000	0.86[EUR][1000 genomes]
rs71418546	0.86[EUR][1000 genomes]
rs71418548	0.86[EUR][1000 genomes]
rs71418550	0.83[EUR][1000 genomes]
rs71418551	0.89[EUR][1000 genomes]
rs71418552	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71418553	0.89[EUR][1000 genomes]
rs71418557	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116043000-116051600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:116043400-116052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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