Variant report

Variant	rs71418557
Chromosome Location	chr2:116100036-116100037
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13005522	0.96[EUR][1000 genomes]
rs13018318	0.96[EUR][1000 genomes]
rs13018346	0.96[EUR][1000 genomes]
rs13027054	0.96[EUR][1000 genomes]
rs13027383	0.96[EUR][1000 genomes]
rs17044243	0.96[EUR][1000 genomes]
rs17044254	0.81[EUR][1000 genomes]
rs17453124	0.81[EUR][1000 genomes]
rs34195762	0.96[EUR][1000 genomes]
rs34423273	0.96[EUR][1000 genomes]
rs34777388	0.96[EUR][1000 genomes]
rs34851935	0.81[EUR][1000 genomes]
rs34911120	0.96[EUR][1000 genomes]
rs34938977	0.96[EUR][1000 genomes]
rs35583738	0.81[EUR][1000 genomes]
rs36000676	0.81[EUR][1000 genomes]
rs71418547	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71418551	0.96[EUR][1000 genomes]
rs71418552	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71418553	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3451356	chr2:116073771-116101275	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv962038	chr2:116093329-116100294	Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116099800-116100400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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