Variant report
| Variant | rs35583738 |
|---|---|
| Chromosome Location | chr2:116128793-116128794 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12990078 | 0.87[AMR][1000 genomes] |
| rs13005522 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13018318 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13018346 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13022199 | 1.00[ASN][1000 genomes] |
| rs13027054 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13027383 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17044243 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17044254 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17453124 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17453131 | 0.95[ASN][1000 genomes] |
| rs17453235 | 1.00[ASN][1000 genomes] |
| rs34195762 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34423273 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34777388 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34851935 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34911120 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34938977 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35568580 | 1.00[ASN][1000 genomes] |
| rs35777208 | 1.00[ASN][1000 genomes] |
| rs36000676 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71418551 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71418552 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71418553 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs71418557 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834339 | chr2:115953298-116132979 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv874918 | chr2:116098665-116183946 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv963924 | chr2:116110836-116134022 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116119000-116131800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr2:116122400-116130200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
