Variant report

Variant	rs17453131
Chromosome Location	chr2:116151844-116151845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13022199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13027383	0.84[ASN][1000 genomes]
rs17044243	0.84[ASN][1000 genomes]
rs17044254	0.95[ASN][1000 genomes]
rs17453124	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17453235	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34851935	0.85[ASN][1000 genomes]
rs35568580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35583738	0.95[ASN][1000 genomes]
rs35777208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36000676	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116144800-116152600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:116151200-116152200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:116151200-116153600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:116151400-116153400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:116151600-116153400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:116151800-116152600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links