Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12990078	0.87[AMR][1000 genomes]
rs13005522	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13018318	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13018346	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13022199	1.00[ASN][1000 genomes]
rs13027054	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13027383	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17044243	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17044254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453131	0.95[ASN][1000 genomes]
rs17453235	1.00[ASN][1000 genomes]
rs34195762	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34423273	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34777388	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34851935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34911120	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34938977	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35568580	1.00[ASN][1000 genomes]
rs35583738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35777208	1.00[ASN][1000 genomes]
rs71418551	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71418552	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71418553	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71418557	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv963924	chr2:116110836-116134022	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116119000-116131800	Weak transcription	Pancreas	Pancrea
2	chr2:116130000-116134000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:116130200-116133600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr2:116130200-116133600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:116130200-116134000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr2:116130800-116133800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr2:116131200-116131400	Weak transcription	H9 Cell Line	embryonic stem cell

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