Variant report

Variant	rs35568580
Chromosome Location	chr2:116157589-116157590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13022199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13027383	0.89[ASN][1000 genomes]
rs17044243	0.89[ASN][1000 genomes]
rs17044254	1.00[ASN][1000 genomes]
rs17453124	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17453131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17453235	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34851935	0.90[ASN][1000 genomes]
rs35583738	1.00[ASN][1000 genomes]
rs35777208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000676	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116152800-116162800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:116153600-116159000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:116153800-116159000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:116153800-116159000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:116153800-116159200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:116155600-116159600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:116155600-116170200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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