Variant report
| Variant | rs35363264 |
|---|---|
| Chromosome Location | chr2:116039334-116039335 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12616456 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12617588 | 0.84[ASN][1000 genomes] |
| rs12617785 | 0.91[ASN][1000 genomes] |
| rs12619497 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12619606 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12988978 | 0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12991665 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12993170 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12998960 | 0.83[ASN][1000 genomes] |
| rs13001269 | 0.84[ASN][1000 genomes] |
| rs13009552 | 0.90[ASN][1000 genomes] |
| rs13011541 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13031722 | 0.87[ASN][1000 genomes] |
| rs34168937 | 0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34553628 | 0.92[ASN][1000 genomes] |
| rs34787934 | 0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35672000 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4399739 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs71418540 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs71418546 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71418547 | 0.86[EUR][1000 genomes] |
| rs71418548 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs71418549 | 0.93[ASN][1000 genomes] |
| rs71418550 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001542 | chr2:115920847-116082585 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv834339 | chr2:115953298-116132979 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116039000-116042200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
