Variant report

Variant	rs13009552
Chromosome Location	chr2:116003892-116003893
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12616456	0.98[ASN][1000 genomes]
rs12617588	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12617785	0.80[ASN][1000 genomes]
rs12619497	0.97[ASN][1000 genomes]
rs12619606	1.00[ASN][1000 genomes]
rs12624162	0.81[ASN][1000 genomes]
rs12988978	0.83[ASN][1000 genomes]
rs12991665	0.99[ASN][1000 genomes]
rs12993170	1.00[ASN][1000 genomes]
rs12998960	0.91[ASN][1000 genomes]
rs13001269	0.92[ASN][1000 genomes]
rs13007061	0.81[ASN][1000 genomes]
rs13011541	0.99[ASN][1000 genomes]
rs13031722	0.85[ASN][1000 genomes]
rs13032365	1.00[JPT][hapmap]
rs34168937	0.83[ASN][1000 genomes]
rs34553628	0.82[ASN][1000 genomes]
rs34787934	0.81[ASN][1000 genomes]
rs35363264	0.90[ASN][1000 genomes]
rs35672000	0.90[ASN][1000 genomes]
rs4399739	1.00[ASN][1000 genomes]
rs71418540	1.00[ASN][1000 genomes]
rs71418546	0.90[ASN][1000 genomes]
rs71418548	0.83[ASN][1000 genomes]
rs71418549	0.83[ASN][1000 genomes]
rs71418550	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115996000-116007400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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