Variant report
| Variant | rs13032365 |
|---|---|
| Chromosome Location | chr2:115988211-115988212 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12616332 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12616456 | 0.92[ASN][1000 genomes] |
| rs12617588 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12619497 | 0.91[ASN][1000 genomes] |
| rs12619606 | 0.92[ASN][1000 genomes] |
| rs12624162 | 0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12991665 | 0.93[ASN][1000 genomes] |
| rs12993170 | 0.92[ASN][1000 genomes] |
| rs12998960 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13001269 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13005061 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13007061 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13009552 | 0.92[ASN][1000 genomes] |
| rs13011541 | 0.93[ASN][1000 genomes] |
| rs13031722 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35363264 | 0.84[ASN][1000 genomes] |
| rs35672000 | 0.84[ASN][1000 genomes] |
| rs35747327 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4399739 | 0.92[ASN][1000 genomes] |
| rs71418540 | 0.92[ASN][1000 genomes] |
| rs71418546 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014713 | chr2:115858427-116018055 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001542 | chr2:115920847-116082585 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv834339 | chr2:115953298-116132979 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv522754 | chr2:115983419-116003178 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
