Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12616332	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12616456	0.92[ASN][1000 genomes]
rs12617588	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619497	0.91[ASN][1000 genomes]
rs12619606	0.92[ASN][1000 genomes]
rs12624162	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12991665	0.93[ASN][1000 genomes]
rs12993170	0.92[ASN][1000 genomes]
rs12998960	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13005061	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13007061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13009552	0.92[ASN][1000 genomes]
rs13011541	0.93[ASN][1000 genomes]
rs13031722	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13032365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs35363264	0.84[ASN][1000 genomes]
rs35672000	0.84[ASN][1000 genomes]
rs35747327	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4399739	0.92[ASN][1000 genomes]
rs71418540	0.92[ASN][1000 genomes]
rs71418546	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv522754	chr2:115983419-116003178	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13001269	IL1F6	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115989200-115994600	Enhancers	Fetal Intestine Large	intestine
2	chr2:115989800-115994400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:115992000-115994600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
4	chr2:115993000-115994000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:115993000-115994200	Enhancers	Fetal Intestine Small	intestine
6	chr2:115993200-115993600	Enhancers	Pancreas	Pancrea

Quick Search: