Variant report

Variant	rs12624162
Chromosome Location	chr2:115946132-115946133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12616332	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12616456	0.83[ASN][1000 genomes]
rs12617588	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12619606	0.81[ASN][1000 genomes]
rs12993170	0.81[ASN][1000 genomes]
rs12998960	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13001269	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13005061	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13007061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13009552	0.81[ASN][1000 genomes]
rs13031722	0.83[EUR][1000 genomes]
rs13032365	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs35747327	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4399739	0.81[ASN][1000 genomes]
rs71418540	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115932600-115946400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:115942200-115949800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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