Variant report

Variant	rs7143791
Chromosome Location	chr14:22238121-22238122
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:22238003..22239945-chr14:22252615..22254697,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131222	0.95[CEU][hapmap]
rs10144962	0.95[CEU][hapmap]
rs10147985	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10483257	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs11157237	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs11621002	0.90[CEU][hapmap]
rs11621081	0.94[CEU][hapmap]
rs11623274	0.95[CEU][hapmap]
rs11623408	0.95[CEU][hapmap]
rs11846985	0.90[CEU][hapmap]
rs12437386	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs12437417	0.95[CEU][hapmap]
rs12885171	0.81[CEU][hapmap]
rs12885356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888724	0.95[CEU][hapmap]
rs12890321	0.94[CEU][hapmap]
rs12891026	0.80[CEU][hapmap]
rs12895847	0.89[CEU][hapmap]
rs12895871	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs12896233	0.95[CEU][hapmap];0.87[MEX][hapmap]
rs12897085	0.85[CEU][hapmap]
rs12897392	0.95[CEU][hapmap]
rs12897401	0.95[CEU][hapmap]
rs12897764	0.81[CEU][hapmap]
rs17197473	0.81[CEU][hapmap]
rs1882699	0.95[CEU][hapmap];0.82[TSI][hapmap]
rs1978024	0.81[CEU][hapmap]
rs2010412	0.81[CEU][hapmap]
rs2017238	0.85[CEU][hapmap]
rs28542442	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4329837	0.95[CEU][hapmap]
rs4981380	0.80[EUR][1000 genomes]
rs4981383	0.95[CEU][hapmap];0.87[TSI][hapmap]
rs4981384	0.95[CEU][hapmap]
rs67908429	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7145515	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs8004645	0.95[CEU][hapmap];0.89[JPT][hapmap]
rs8019263	0.95[CEU][hapmap]
rs879657	0.81[CEU][hapmap]
rs879659	0.81[CEU][hapmap]
rs9944125	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563852	chr14:22205447-22344160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv528996	chr14:22220569-22242293	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901480	chr14:22221211-22255090	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1037902	chr14:22229021-22354103	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv832741	chr14:22235781-22413637	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7143791	SLC7A8	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22237000-22244600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:22237400-22239600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:22237400-22245000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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