Variant report

Variant	rs9944125
Chromosome Location	chr14:22235935-22235936
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10131222	0.95[CEU][hapmap]
rs10144962	0.95[CEU][hapmap]
rs10145621	0.90[ASN][1000 genomes]
rs10147985	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10483257	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11157237	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11621002	0.90[CEU][hapmap]
rs11621081	0.94[CEU][hapmap]
rs11623274	0.95[CEU][hapmap]
rs11623408	0.95[CEU][hapmap]
rs11846985	0.90[CEU][hapmap]
rs12437386	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12437417	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs12885171	0.82[CEU][hapmap]
rs12885356	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12888724	0.95[CEU][hapmap]
rs12890321	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12891026	0.81[CEU][hapmap]
rs12895847	0.89[CEU][hapmap]
rs12895871	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12896233	0.95[CEU][hapmap]
rs12897085	0.85[CEU][hapmap]
rs12897392	0.95[CEU][hapmap]
rs12897401	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs12897764	0.81[CEU][hapmap]
rs1534815	0.81[CEU][hapmap]
rs17197466	0.81[CEU][hapmap]
rs17197473	0.81[CEU][hapmap]
rs1882699	0.95[CEU][hapmap]
rs1978024	0.81[CEU][hapmap]
rs2010412	0.81[CEU][hapmap]
rs2017238	0.85[CEU][hapmap]
rs28542442	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4329837	0.95[CEU][hapmap]
rs4981380	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4981383	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4981384	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs4982504	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4982509	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67908429	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143791	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7145515	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8004645	0.95[CEU][hapmap]
rs8019263	0.95[CEU][hapmap]
rs879657	0.82[CEU][hapmap]
rs879659	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563852	chr14:22205447-22344160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv528996	chr14:22220569-22242293	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901480	chr14:22221211-22255090	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1037902	chr14:22229021-22354103	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv832741	chr14:22235781-22413637	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links