Variant report
Variant | rs7145515 |
---|---|
Chromosome Location | chr14:22247561-22247562 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000222776 | TF binding region |
TRAV7 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10131222 | 0.95[CEU][hapmap] |
rs10144962 | 0.95[CEU][hapmap] |
rs10145621 | 0.88[ASN][1000 genomes] |
rs10147985 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10483257 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
rs11157237 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap] |
rs11621002 | 0.90[CEU][hapmap] |
rs11621081 | 0.94[CEU][hapmap] |
rs11623274 | 0.95[CEU][hapmap] |
rs11623408 | 0.95[CEU][hapmap] |
rs11846985 | 0.90[CEU][hapmap] |
rs12437386 | 0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
rs12437417 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap] |
rs12885171 | 0.81[CEU][hapmap] |
rs12885356 | 1.00[CEU][hapmap];0.80[EUR][1000 genomes] |
rs12888724 | 0.95[CEU][hapmap] |
rs12890321 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
rs12891026 | 0.80[CEU][hapmap] |
rs12895847 | 0.89[CEU][hapmap] |
rs12895871 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap] |
rs12896233 | 0.95[CEU][hapmap] |
rs12897085 | 0.85[CEU][hapmap] |
rs12897392 | 0.95[CEU][hapmap] |
rs12897401 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap] |
rs12897764 | 0.81[CEU][hapmap] |
rs17197473 | 0.81[CEU][hapmap] |
rs1882699 | 0.95[CEU][hapmap];0.95[TSI][hapmap] |
rs1978024 | 0.81[CEU][hapmap] |
rs2010412 | 0.81[CEU][hapmap] |
rs2017238 | 0.85[CEU][hapmap] |
rs28542442 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4329837 | 0.95[CEU][hapmap] |
rs4981380 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4981383 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
rs4981384 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
rs4982504 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4982509 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs67908429 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7143791 | 1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes] |
rs8004645 | 0.95[CEU][hapmap] |
rs8019263 | 0.95[CEU][hapmap] |
rs879657 | 0.81[CEU][hapmap] |
rs879659 | 0.81[CEU][hapmap] |
rs9944125 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1042309 | chr14:22042511-22866936 | Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 90 gene(s) | inside rSNPs | diseases |
2 | nsv456147 | chr14:22073473-22305071 | Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
3 | nsv563851 | chr14:22073473-22305071 | Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
4 | nsv563852 | chr14:22205447-22344160 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
5 | nsv901480 | chr14:22221211-22255090 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv1037902 | chr14:22229021-22354103 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
7 | nsv832741 | chr14:22235781-22413637 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
8 | nsv456148 | chr14:22242293-22292805 | Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
9 | nsv563853 | chr14:22242293-22292805 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:22245400-22248600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
2 | chr14:22245400-22248600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
3 | chr14:22245400-22248600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |