Variant report

Variant	rs7145435
Chromosome Location	chr14:72149647-72149648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71787272..71789927-chr14:72149469..72152199,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction
ENSG00000259146	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10146552	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10147863	0.82[YRI][hapmap]
rs1859551	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35958404	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3784063	0.84[ASN][1000 genomes]
rs4140798	0.82[AFR][1000 genomes]
rs4464023	0.92[CEU][hapmap];0.80[CHB][hapmap];0.95[YRI][hapmap]
rs7141155	0.91[YRI][hapmap]
rs7150965	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7401916	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8013708	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72088200-72159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:72109800-72150800	Weak transcription	Colonic Mucosa	Colon
3	chr14:72118600-72191400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:72119200-72152200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:72125400-72151000	Weak transcription	Ovary	ovary
6	chr14:72126200-72159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:72128000-72167800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:72129400-72153600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:72129400-72196800	Weak transcription	Right Ventricle	heart
10	chr14:72131800-72154000	Weak transcription	Fetal Heart	heart
11	chr14:72134000-72153200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:72134200-72151000	Weak transcription	NHDF-Ad	bronchial
13	chr14:72134200-72159000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:72139400-72153600	Weak transcription	Fetal Kidney	kidney
15	chr14:72139600-72150600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:72139600-72150800	Weak transcription	NHLF	lung
17	chr14:72139600-72151000	Weak transcription	Left Ventricle	heart
18	chr14:72139600-72151000	Weak transcription	Thymus	Thymus
19	chr14:72139600-72153800	Weak transcription	Fetal Lung	lung
20	chr14:72139800-72150600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:72139800-72150800	Weak transcription	HSMMtube	muscle
22	chr14:72139800-72155200	Weak transcription	Placenta	Placenta
23	chr14:72140000-72150800	Weak transcription	HepG2	liver
24	chr14:72140000-72151000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:72140000-72151000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:72140000-72151800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr14:72140000-72156800	Weak transcription	Fetal Thymus	thymus
28	chr14:72140000-72165800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:72140400-72152000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:72140600-72176000	Weak transcription	Hela-S3	cervix
31	chr14:72142000-72151000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:72142000-72151000	Weak transcription	Aorta	Aorta
33	chr14:72142000-72151000	Weak transcription	Gastric	stomach
34	chr14:72142000-72153400	Weak transcription	Fetal Muscle Leg	muscle
35	chr14:72142000-72191400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:72142200-72150800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:72142200-72150800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:72142200-72151000	Weak transcription	Adipose Nuclei	Adipose
39	chr14:72142400-72150600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:72142400-72150600	Weak transcription	Primary T cells from cord blood	blood
41	chr14:72142400-72150600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:72142400-72151600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:72142400-72153600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr14:72142400-72153600	Weak transcription	HSMM	muscle
45	chr14:72142600-72150400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr14:72142600-72150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:72142600-72150600	Weak transcription	Liver	Liver
48	chr14:72142600-72150600	Weak transcription	Brain Anterior Caudate	brain
49	chr14:72142600-72150600	Weak transcription	Brain Hippocampus Middle	brain
50	chr14:72142600-72150600	Weak transcription	Brain Substantia Nigra	brain

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