Variant report

Variant	rs3784063
Chromosome Location	chr14:72088956-72088957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10136590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10143346	0.82[ASN][1000 genomes]
rs10146552	0.82[ASN][1000 genomes]
rs10147863	0.87[YRI][hapmap]
rs11627930	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11628525	0.92[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs12897977	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1859551	0.87[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs35958404	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4464023	0.87[ASW][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.90[LWK][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs4902939	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6574014	0.81[AFR][1000 genomes]
rs7141155	0.96[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7145435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs7150965	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7155008	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7401916	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8013708	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72053400-72098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:72059000-72098600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:72065800-72089600	Weak transcription	HSMMtube	muscle
4	chr14:72072600-72090600	Weak transcription	Fetal Intestine Large	intestine
5	chr14:72072600-72103600	Weak transcription	Left Ventricle	heart
6	chr14:72073200-72090600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:72073200-72099200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:72073200-72137800	Weak transcription	Esophagus	oesophagus
9	chr14:72073400-72090600	Weak transcription	Pancreas	Pancrea
10	chr14:72073400-72093600	Weak transcription	Gastric	stomach
11	chr14:72073400-72111000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:72074000-72089800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:72074000-72090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:72074000-72090600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:72075200-72092600	Weak transcription	Brain Substantia Nigra	brain
16	chr14:72075200-72093800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:72075200-72106800	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:72077800-72089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:72077800-72092800	Weak transcription	Fetal Lung	lung
20	chr14:72077800-72096800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:72078000-72090600	Weak transcription	Adipose Nuclei	Adipose
22	chr14:72078000-72090600	Weak transcription	Brain Anterior Caudate	brain
23	chr14:72078200-72095800	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:72078600-72100000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr14:72080200-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:72080600-72090600	Weak transcription	Ovary	ovary
27	chr14:72081600-72090600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr14:72082600-72125000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:72083000-72111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:72083400-72101600	Weak transcription	Fetal Stomach	stomach
31	chr14:72083600-72099000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:72083600-72118000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:72083600-72128200	Weak transcription	Spleen	Spleen
34	chr14:72083800-72099000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:72083800-72099000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr14:72083800-72100400	Weak transcription	Fetal Thymus	thymus
37	chr14:72083800-72105200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:72083800-72109800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:72084000-72090800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:72084000-72111800	Weak transcription	Thymus	Thymus
41	chr14:72084200-72090200	Weak transcription	Fetal Heart	heart
42	chr14:72084400-72089600	Weak transcription	HepG2	liver
43	chr14:72084400-72090600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:72084600-72101400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr14:72084800-72090600	Weak transcription	Lung	lung
46	chr14:72085000-72090800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:72085400-72092800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr14:72086000-72093000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr14:72086400-72089400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:72086400-72089800	Genic enhancers	Osteobl	bone

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