Variant report

Variant	rs11627930
Chromosome Location	chr14:72034494-72034495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10129301	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10130652	0.82[ASN][1000 genomes]
rs10136590	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10143346	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11628525	0.91[EUR][1000 genomes]
rs12897977	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2108048	0.83[ASN][1000 genomes]
rs3088206	0.81[ASN][1000 genomes]
rs35958404	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3784063	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4464023	0.83[ASN][1000 genomes]
rs4902939	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574014	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7141155	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7155008	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72022600-72040200	Weak transcription	Osteobl	bone
2	chr14:72023400-72041000	Weak transcription	HSMM	muscle
3	chr14:72024400-72052400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:72030400-72041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:72030600-72040000	Weak transcription	Dnd41	blood
6	chr14:72030600-72048800	Weak transcription	Fetal Kidney	kidney
7	chr14:72030800-72040000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:72031000-72052600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:72032000-72042800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:72032200-72040000	Weak transcription	Aorta	Aorta
11	chr14:72032400-72041800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:72033000-72035400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:72033000-72035600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:72033400-72034600	Weak transcription	Spleen	Spleen
15	chr14:72033400-72036000	Weak transcription	Brain Anterior Caudate	brain
16	chr14:72033400-72036400	Weak transcription	Primary T cells from cord blood	blood
17	chr14:72033400-72040000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr14:72033400-72040800	Weak transcription	HSMMtube	muscle
19	chr14:72033600-72034800	Enhancers	NHDF-Ad	bronchial
20	chr14:72033600-72041000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:72033800-72040000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr14:72034000-72040000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:72034000-72040200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr14:72034000-72040800	Weak transcription	Primary B cells from cord blood	blood
25	chr14:72034200-72039600	Weak transcription	GM12878-XiMat	blood
26	chr14:72034200-72040400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links