Variant report

Variant	rs35958404
Chromosome Location	chr14:72074427-72074428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72044562..72046264-chr14:72073210..72075565,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10129301	0.86[EUR][1000 genomes]
rs10136590	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10143346	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10146552	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11627930	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12897977	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1859551	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3784063	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902939	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574014	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7141155	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7145435	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7155008	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7401916	0.83[ASN][1000 genomes]
rs8013708	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72053400-72098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:72055200-72087800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:72059000-72098600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:72059400-72088000	Weak transcription	NHLF	lung
5	chr14:72059800-72085600	Weak transcription	NH-A	brain
6	chr14:72059800-72087600	Weak transcription	Hela-S3	cervix
7	chr14:72063200-72087200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:72064800-72084800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:72064800-72085000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:72065000-72087200	Weak transcription	NHEK	skin
11	chr14:72065200-72085400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr14:72065400-72085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:72065800-72085600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:72065800-72089600	Weak transcription	HSMMtube	muscle
15	chr14:72067400-72084600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr14:72067400-72084600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr14:72069400-72083800	Weak transcription	Primary B cells from cord blood	blood
18	chr14:72071200-72074800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:72071400-72085400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:72072200-72075200	Enhancers	Brain Anterior Caudate	brain
21	chr14:72072400-72075000	Enhancers	Brain Angular Gyrus	brain
22	chr14:72072400-72075000	Enhancers	Fetal Thymus	thymus
23	chr14:72072600-72087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:72072600-72090600	Weak transcription	Fetal Intestine Large	intestine
25	chr14:72072600-72103600	Weak transcription	Left Ventricle	heart
26	chr14:72072800-72074600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr14:72072800-72087200	Weak transcription	Aorta	Aorta
28	chr14:72073200-72074600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:72073200-72075000	Flanking Active TSS	GM12878-XiMat	blood
30	chr14:72073200-72075200	Enhancers	Brain Hippocampus Middle	brain
31	chr14:72073200-72085400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:72073200-72085600	Weak transcription	HSMM	muscle
33	chr14:72073200-72087200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:72073200-72087400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:72073200-72090600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:72073200-72099200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:72073200-72137800	Weak transcription	Esophagus	oesophagus
38	chr14:72073400-72075200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:72073400-72090600	Weak transcription	Pancreas	Pancrea
40	chr14:72073400-72093600	Weak transcription	Gastric	stomach
41	chr14:72073400-72111000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:72073600-72074800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr14:72073600-72075200	Enhancers	Dnd41	blood
44	chr14:72073600-72077400	Weak transcription	Fetal Heart	heart
45	chr14:72073600-72085800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr14:72073800-72075000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr14:72073800-72075000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr14:72074000-72074800	Enhancers	Fetal Brain Female	brain
49	chr14:72074000-72075000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr14:72074000-72075200	Enhancers	Brain Substantia Nigra	brain

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