Variant report

Variant	rs10136590
Chromosome Location	chr14:72072970-72072971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11627930	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11628525	0.86[EUR][1000 genomes]
rs12897977	0.84[EUR][1000 genomes]
rs35958404	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3784063	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902939	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6574014	0.85[AFR][1000 genomes]
rs7141155	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7155008	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7401916	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8013708	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72053400-72098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:72055200-72087800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:72059000-72098600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:72059400-72088000	Weak transcription	NHLF	lung
5	chr14:72059800-72085600	Weak transcription	NH-A	brain
6	chr14:72059800-72087600	Weak transcription	Hela-S3	cervix
7	chr14:72062800-72074000	Weak transcription	Brain Substantia Nigra	brain
8	chr14:72063000-72073200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:72063200-72087200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:72064800-72084800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:72064800-72085000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:72065000-72073200	Weak transcription	Small Intestine	intestine
13	chr14:72065000-72087200	Weak transcription	NHEK	skin
14	chr14:72065200-72085400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr14:72065400-72085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:72065800-72085600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:72065800-72089600	Weak transcription	HSMMtube	muscle
18	chr14:72067400-72084600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:72067400-72084600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr14:72069400-72083800	Weak transcription	Primary B cells from cord blood	blood
21	chr14:72069800-72074400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:72071000-72073200	ZNF genes & repeats	GM12878-XiMat	blood
23	chr14:72071200-72074800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:72071400-72074200	Weak transcription	Osteobl	bone
25	chr14:72071400-72085400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:72072200-72073000	Enhancers	HMEC	breast
27	chr14:72072200-72073200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr14:72072200-72073200	ZNF genes & repeats	HSMM	muscle
29	chr14:72072200-72074400	Enhancers	Primary T cells from cord blood	blood
30	chr14:72072200-72075200	Enhancers	Brain Anterior Caudate	brain
31	chr14:72072400-72073000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr14:72072400-72073000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:72072400-72073200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:72072400-72073200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:72072400-72073200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr14:72072400-72073200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:72072400-72073200	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr14:72072400-72073200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr14:72072400-72073400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:72072400-72073400	Enhancers	Primary T cells fromperipheralblood	blood
41	chr14:72072400-72073400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr14:72072400-72073400	Enhancers	Pancreas	Pancrea
43	chr14:72072400-72073600	Enhancers	Fetal Heart	heart
44	chr14:72072400-72074000	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr14:72072400-72074400	Enhancers	Thymus	Thymus
46	chr14:72072400-72075000	Enhancers	Brain Angular Gyrus	brain
47	chr14:72072400-72075000	Enhancers	Fetal Thymus	thymus
48	chr14:72072600-72073000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:72072600-72073200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr14:72072600-72073200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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