Variant report

Variant	rs71467876
Chromosome Location	chr11:75103322-75103323
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12285820	0.82[AFR][1000 genomes]
rs12289289	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12293207	0.82[AFR][1000 genomes]
rs12294621	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34113413	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35597977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35915199	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36098078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75100200-75110200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:75100400-75105200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:75100400-75105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:75100400-75106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:75100400-75106000	Weak transcription	Spleen	Spleen
6	chr11:75100400-75106200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:75100400-75106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:75100400-75110400	Weak transcription	HSMMtube	muscle
9	chr11:75100600-75105400	Weak transcription	K562	blood
10	chr11:75100600-75110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:75101200-75105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:75103000-75104800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:75103200-75110200	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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