Variant report

Variant	rs34113413
Chromosome Location	chr11:75092811-75092812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75092274..75095773-chr11:75096854..75099923,3	K562	blood:
2	chr11:75090671..75094563-chr11:75095690..75099742,4	K562	blood:
3	chr11:75092197..75094711-chr11:75109480..75112038,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12272576	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12285820	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12289289	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12290287	0.86[AFR][1000 genomes]
rs12291467	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12293207	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12294621	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35597977	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35915199	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36098078	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71467876	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv993873	chr11:75090965-75093952	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75081200-75095200	Weak transcription	Dnd41	blood
2	chr11:75083600-75094200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
4	chr11:75087400-75099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:75089800-75093000	Enhancers	Fetal Intestine Small	intestine
6	chr11:75090400-75096000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:75090800-75093000	Enhancers	Placenta	Placenta
8	chr11:75091200-75093000	Enhancers	Stomach Mucosa	stomach
9	chr11:75091400-75094200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:75091400-75096000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:75091800-75093000	Enhancers	Lung	lung
12	chr11:75092000-75093600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:75092000-75094200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:75092000-75095400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:75092000-75098200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:75092000-75099400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:75092200-75093200	Bivalent Enhancer	HepG2	liver
18	chr11:75092200-75094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:75092200-75094200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:75092200-75095400	Weak transcription	Liver	Liver
21	chr11:75092200-75095400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:75092200-75095400	Weak transcription	Fetal Stomach	stomach
23	chr11:75092200-75095400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:75092200-75095400	Weak transcription	Hela-S3	cervix
25	chr11:75092200-75095600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:75092200-75098000	Weak transcription	HSMMtube	muscle
27	chr11:75092200-75099400	Weak transcription	Pancreas	Pancrea
28	chr11:75092400-75093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:75092400-75093600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:75092400-75094200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:75092400-75094200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:75092400-75094200	Weak transcription	A549	lung
33	chr11:75092400-75095400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:75092400-75095400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:75092400-75095400	Weak transcription	Adipose Nuclei	Adipose
36	chr11:75092400-75095400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:75092400-75095400	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:75092400-75095400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:75092400-75095400	Weak transcription	K562	blood
40	chr11:75092400-75095600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:75092400-75095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:75092400-75098400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:75092400-75099400	Weak transcription	Colonic Mucosa	Colon
44	chr11:75092400-75099400	Weak transcription	Colon Smooth Muscle	Colon
45	chr11:75092400-75099400	Weak transcription	Spleen	Spleen
46	chr11:75092600-75093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:75092600-75093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:75092600-75095400	Weak transcription	Fetal Intestine Large	intestine
49	chr11:75092800-75093000	Enhancers	Primary B cells from cord blood	blood
50	chr11:75092800-75095400	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links