Variant report

Variant	rs12291467
Chromosome Location	chr11:75076596-75076597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12272576	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12280535	0.82[ASN][1000 genomes]
rs12285820	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12289289	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12290287	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12293207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12294621	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34113413	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35915199	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75063600-75076800	Weak transcription	Hela-S3	cervix
2	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
4	chr11:75072200-75076800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:75072200-75077000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:75075800-75076800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:75076000-75078800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:75076000-75080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:75076000-75080600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:75076000-75080800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:75076200-75077000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:75076200-75077600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:75076400-75079400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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