Variant report

Variant	rs12285820
Chromosome Location	chr11:75080069-75080070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75056296..75059058-chr11:75079339..75081796,2	MCF-7	breast:
2	chr11:75076999..75080604-chr11:75081592..75085575,3	MCF-7	breast:
3	chr11:75073760..75076326-chr11:75079019..75081067,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11539810	0.90[JPT][hapmap]
rs12272576	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274033	1.00[JPT][hapmap]
rs12280535	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12289289	0.84[ASW][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12290287	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12291467	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12293207	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12294621	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3094303	0.90[JPT][hapmap]
rs3094304	0.90[JPT][hapmap]
rs3133186	0.90[JPT][hapmap]
rs3133187	0.90[JPT][hapmap]
rs34113413	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35597977	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35915199	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36098078	0.81[ASN][1000 genomes]
rs71467876	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
3	chr11:75076000-75080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:75076000-75080600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:75076000-75080800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:75077200-75083000	Weak transcription	Fetal Lung	lung
7	chr11:75077400-75080800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:75077600-75080600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:75077600-75080600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:75077600-75083200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:75077800-75081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:75078000-75080600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:75078200-75080800	Weak transcription	Stomach Mucosa	stomach
14	chr11:75078200-75082800	Weak transcription	K562	blood
15	chr11:75078400-75080600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr11:75078400-75080800	Weak transcription	Hela-S3	cervix
17	chr11:75079200-75083000	Weak transcription	Placenta	Placenta
18	chr11:75079400-75080400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:75080000-75080200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:75080000-75080800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:75080000-75081200	ZNF genes & repeats	Dnd41	blood

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