Variant report

Variant	rs12272576
Chromosome Location	chr11:75080636-75080637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75061282..75063321-chr11:75080294..75083043,2	K562	blood:
2	chr11:75056296..75059058-chr11:75079339..75081796,2	MCF-7	breast:
3	chr11:75073760..75076326-chr11:75079019..75081067,2	K562	blood:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12280535	0.81[ASN][1000 genomes]
rs12285820	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289289	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12290287	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12291467	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12293207	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12294621	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34113413	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35597977	0.81[ASN][1000 genomes]
rs35915199	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36098078	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
3	chr11:75076000-75080800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:75077200-75083000	Weak transcription	Fetal Lung	lung
5	chr11:75077400-75080800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:75077600-75083200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:75077800-75081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:75078200-75080800	Weak transcription	Stomach Mucosa	stomach
9	chr11:75078200-75082800	Weak transcription	K562	blood
10	chr11:75078400-75080800	Weak transcription	Hela-S3	cervix
11	chr11:75079200-75083000	Weak transcription	Placenta	Placenta
12	chr11:75080000-75080800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:75080000-75081200	ZNF genes & repeats	Dnd41	blood
14	chr11:75080200-75081400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:75080400-75081200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:75080400-75081400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr11:75080400-75081400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:75080600-75081200	Enhancers	Primary B cells from cord blood	blood
19	chr11:75080600-75081200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr11:75080600-75081200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr11:75080600-75081200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr11:75080600-75081400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:75080600-75081400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:75080600-75081600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr11:75080600-75083600	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links