Variant report

Variant	rs7148519
Chromosome Location	chr14:39713065-39713066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39711895..39714858-chr14:39734038..39737038,4	MCF-7	breast:
2	chr14:39708069..39709628-chr14:39711747..39713367,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258941	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000150527	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17109188	1.00[AMR][1000 genomes]
rs17109213	1.00[AMR][1000 genomes]
rs17109227	1.00[AMR][1000 genomes]
rs17109249	1.00[AMR][1000 genomes]
rs34909359	1.00[AMR][1000 genomes]
rs56859252	1.00[AMR][1000 genomes]
rs57566573	1.00[AMR][1000 genomes]
rs58371839	1.00[AMR][1000 genomes]
rs59371684	1.00[AMR][1000 genomes]
rs59546917	1.00[AMR][1000 genomes]
rs59597680	1.00[AMR][1000 genomes]
rs59919221	1.00[AMR][1000 genomes]
rs59953702	1.00[AMR][1000 genomes]
rs60367463	1.00[AMR][1000 genomes]
rs60921042	1.00[AMR][1000 genomes]
rs61176483	1.00[AMR][1000 genomes]
rs61549948	1.00[AMR][1000 genomes]
rs61668966	1.00[AMR][1000 genomes]
rs73275040	1.00[AMR][1000 genomes]
rs73275059	1.00[AMR][1000 genomes]
rs73275062	1.00[AMR][1000 genomes]
rs73275075	1.00[AMR][1000 genomes]
rs73275076	1.00[AMR][1000 genomes]
rs73277428	1.00[AMR][1000 genomes]
rs73277432	1.00[AMR][1000 genomes]
rs73277440	1.00[AMR][1000 genomes]
rs73277451	1.00[AMR][1000 genomes]
rs73277466	1.00[AMR][1000 genomes]
rs73277467	1.00[AMR][1000 genomes]
rs73277471	1.00[AMR][1000 genomes]
rs73277473	1.00[AMR][1000 genomes]
rs73277474	1.00[AMR][1000 genomes]
rs73277475	1.00[AMR][1000 genomes]
rs73277478	1.00[AMR][1000 genomes]
rs73277496	1.00[AMR][1000 genomes]
rs73277499	1.00[AMR][1000 genomes]
rs73277501	1.00[AMR][1000 genomes]
rs73279309	1.00[AMR][1000 genomes]
rs73279392	1.00[AMR][1000 genomes]
rs73283432	1.00[AMR][1000 genomes]
rs73283442	1.00[AMR][1000 genomes]
rs73283453	1.00[AMR][1000 genomes]
rs73285541	1.00[AMR][1000 genomes]
rs73285564	1.00[AMR][1000 genomes]
rs73285569	1.00[AMR][1000 genomes]
rs73285591	1.00[AMR][1000 genomes]
rs73285598	1.00[AMR][1000 genomes]
rs73285599	1.00[AMR][1000 genomes]
rs73285766	1.00[AMR][1000 genomes]
rs73285774	1.00[AMR][1000 genomes]
rs73287518	1.00[AMR][1000 genomes]
rs73287521	1.00[AMR][1000 genomes]
rs73287662	1.00[AMR][1000 genomes]
rs73291562	1.00[AMR][1000 genomes]
rs73291565	1.00[AMR][1000 genomes]
rs73291581	1.00[AMR][1000 genomes]
rs73291596	1.00[AMR][1000 genomes]
rs73291598	1.00[AMR][1000 genomes]
rs73293309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39706200-39715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:39708600-39713400	Strong transcription	Fetal Intestine Large	intestine
5	chr14:39708800-39718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:39710000-39717400	Strong transcription	HepG2	liver
7	chr14:39710600-39716000	Strong transcription	Fetal Intestine Small	intestine
8	chr14:39711200-39715600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:39711200-39715800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:39711200-39715800	Weak transcription	Osteobl	bone
11	chr14:39711200-39716000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:39711200-39719400	Strong transcription	Liver	Liver
13	chr14:39711400-39716000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:39712800-39713600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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