Variant report

Variant	rs73275040
Chromosome Location	chr14:39691318-39691319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39690148..39692016-chr14:39692891..39694587,2	MCF-7	breast:
2	chr14:39682657..39684941-chr14:39688892..39691527,2	MCF-7	breast:
3	chr14:39642456..39648509-chr14:39688590..39693921,7	MCF-7	breast:
4	chr14:39655421..39657718-chr14:39690495..39693068,2	K562	blood:
5	chr14:39651862..39654641-chr14:39690512..39693459,3	K562	blood:

Variant related genes	Relation type
ENSG00000270503	Chromatin interaction
ENSG00000100941	Chromatin interaction
ENSG00000259083	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs17109188	1.00[AMR][1000 genomes]
rs34909359	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56859252	1.00[AMR][1000 genomes]
rs57566573	1.00[AMR][1000 genomes]
rs57917331	0.92[AFR][1000 genomes]
rs58371839	1.00[AMR][1000 genomes]
rs59371684	1.00[AMR][1000 genomes]
rs59546917	1.00[AMR][1000 genomes]
rs59919221	1.00[AMR][1000 genomes]
rs59953702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60367463	1.00[AMR][1000 genomes]
rs60921042	1.00[AMR][1000 genomes]
rs61176483	1.00[AMR][1000 genomes]
rs61549948	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61668966	1.00[AMR][1000 genomes]
rs7148519	1.00[AMR][1000 genomes]
rs73275059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277428	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277440	1.00[AMR][1000 genomes]
rs73277451	1.00[AMR][1000 genomes]
rs73277466	1.00[AMR][1000 genomes]
rs73277467	1.00[AMR][1000 genomes]
rs73277471	1.00[AMR][1000 genomes]
rs73277473	1.00[AMR][1000 genomes]
rs73277474	1.00[AMR][1000 genomes]
rs73277475	1.00[AMR][1000 genomes]
rs73277478	1.00[AMR][1000 genomes]
rs73277496	1.00[AMR][1000 genomes]
rs73277499	1.00[AMR][1000 genomes]
rs73277501	1.00[AMR][1000 genomes]
rs73279309	1.00[AMR][1000 genomes]
rs73279392	1.00[AMR][1000 genomes]
rs73283432	1.00[AMR][1000 genomes]
rs73283442	1.00[AMR][1000 genomes]
rs73283453	1.00[AMR][1000 genomes]
rs73285541	1.00[AMR][1000 genomes]
rs73285564	1.00[AMR][1000 genomes]
rs73285569	1.00[AMR][1000 genomes]
rs73285591	1.00[AMR][1000 genomes]
rs73285749	1.00[AMR][1000 genomes]
rs73285766	1.00[AMR][1000 genomes]
rs73285774	1.00[AMR][1000 genomes]
rs73287662	1.00[AMR][1000 genomes]
rs73291562	1.00[AMR][1000 genomes]
rs73291565	1.00[AMR][1000 genomes]
rs73291581	1.00[AMR][1000 genomes]
rs73291596	1.00[AMR][1000 genomes]
rs73291598	1.00[AMR][1000 genomes]
rs73293309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv977619	chr14:39690884-39697666	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39688800-39693000	Weak transcription	HepG2	liver

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