Variant report

Variant	rs73293309
Chromosome Location	chr14:39667660-39667661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39659557..39662468-chr14:39664703..39667964,3	K562	blood:
2	chr14:39666993..39668682-chr14:39671014..39673008,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs34909359	1.00[AMR][1000 genomes]
rs57566573	1.00[AMR][1000 genomes]
rs58371839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59371684	1.00[AMR][1000 genomes]
rs59919221	1.00[AMR][1000 genomes]
rs59953702	1.00[AMR][1000 genomes]
rs59984107	0.81[AFR][1000 genomes]
rs60367463	1.00[AMR][1000 genomes]
rs60921042	1.00[AMR][1000 genomes]
rs61004540	0.84[AFR][1000 genomes]
rs61176483	1.00[AMR][1000 genomes]
rs61549948	1.00[AMR][1000 genomes]
rs7148519	1.00[AMR][1000 genomes]
rs73275040	1.00[AMR][1000 genomes]
rs73275059	1.00[AMR][1000 genomes]
rs73275062	1.00[AMR][1000 genomes]
rs73275075	1.00[AMR][1000 genomes]
rs73275076	1.00[AMR][1000 genomes]
rs73277428	1.00[AMR][1000 genomes]
rs73277432	1.00[AMR][1000 genomes]
rs73277440	1.00[AMR][1000 genomes]
rs73277451	1.00[AMR][1000 genomes]
rs73277466	1.00[AMR][1000 genomes]
rs73277467	1.00[AMR][1000 genomes]
rs73277471	1.00[AMR][1000 genomes]
rs73277473	1.00[AMR][1000 genomes]
rs73277474	1.00[AMR][1000 genomes]
rs73277475	1.00[AMR][1000 genomes]
rs73277478	1.00[AMR][1000 genomes]
rs73277496	1.00[AMR][1000 genomes]
rs73277499	1.00[AMR][1000 genomes]
rs73277501	1.00[AMR][1000 genomes]
rs73279309	1.00[AMR][1000 genomes]
rs73279392	1.00[AMR][1000 genomes]
rs73283432	1.00[AMR][1000 genomes]
rs73283442	1.00[AMR][1000 genomes]
rs73283453	1.00[AMR][1000 genomes]
rs73285719	1.00[AMR][1000 genomes]
rs73285749	1.00[AMR][1000 genomes]
rs73285766	1.00[AMR][1000 genomes]
rs73285774	1.00[AMR][1000 genomes]
rs73287662	1.00[AMR][1000 genomes]
rs73291562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293319	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv974270	chr14:39664152-39680061	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39654400-39672000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:39658000-39672400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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