| No. |
Variant name |
Chromosome position |
Chromatin state |
Related regulatory elements |
Target genes |
Extended variants |
Associated traits |
| 1 |
nsv1016321 |
chr9:1034594-1592366 |
Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
12 gene(s)
|
inside rSNPs
|
diseases
|
| 2 |
nsv539908 |
chr9:1034594-1592366 |
Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'
|
TF binding regionCpG islandChromatin interactive regionlncRNA
|
12 gene(s)
|
inside rSNPs
|
diseases
|
| 3 |
esv2752273 |
chr9:1062218-1824888 |
Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription
|
TF binding regionChromatin interactive regionlncRNA
|
9 gene(s)
|
inside rSNPs
|
diseases
|
| 4 |
nsv1026043 |
chr9:1079462-1732502 |
Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription
|
TF binding regionChromatin interactive regionlncRNA
|
9 gene(s)
|
inside rSNPs
|
diseases
|
| 5 |
nsv539909 |
chr9:1079462-1732502 |
Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription
|
TF binding regionChromatin interactive regionlncRNA
|
9 gene(s)
|
inside rSNPs
|
diseases
|
| 6 |
nsv613052 |
chr9:1311310-1662585 |
Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh
|
TF binding regionChromatin interactive regionlncRNA
|
4 gene(s)
|
inside rSNPs
|
diseases
|
| 7 |
nsv1031422 |
chr9:1318383-1716944 |
Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription
|
TF binding regionChromatin interactive regionlncRNA
|
4 gene(s)
|
inside rSNPs
|
diseases
|
| 8 |
nsv539912 |
chr9:1318383-1716944 |
Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS
|
TF binding regionChromatin interactive regionlncRNA
|
4 gene(s)
|
inside rSNPs
|
diseases
|
| 9 |
nsv1032384 |
chr9:1320386-1719409 |
Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription
|
TF binding regionChromatin interactive regionlncRNA
|
4 gene(s)
|
inside rSNPs
|
diseases
|
| 10 |
nsv539913 |
chr9:1320386-1719409 |
Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh
|
TF binding regionChromatin interactive regionlncRNA
|
4 gene(s)
|
inside rSNPs
|
diseases
|
| 11 |
nsv1016148 |
chr9:1457605-2361750 |
Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
17 gene(s)
|
inside rSNPs
|
diseases
|
| 12 |
nsv539916 |
chr9:1457605-2361750 |
Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh
|
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site
|
17 gene(s)
|
inside rSNPs
|
diseases
|
| 13 |
nsv1030848 |
chr9:1466368-1675561 |
Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS
|
Chromatin interactive regionlncRNA
|
n/a
|
inside rSNPs
|
diseases
|
| 14 |
nsv1017016 |
chr9:1483886-1575368 |
Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS
|
Chromatin interactive region
|
n/a
|
inside rSNPs
|
diseases
|
| 15 |
nsv539918 |
chr9:1483886-1575368 |
Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS
|
Chromatin interactive region
|
n/a
|
inside rSNPs
|
diseases
|
| 16 |
nsv1024603 |
chr9:1499410-1575368 |
Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription
|
Chromatin interactive region
|
n/a
|
inside rSNPs
|
diseases
|
| 17 |
nsv539919 |
chr9:1499410-1575368 |
Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription
|
Chromatin interactive region
|
n/a
|
inside rSNPs
|
diseases
|
| 18 |
nsv892033 |
chr9:1501977-1567276 |
Weak transcription Enhancers ZNF genes & repeats Strong transcription
|
Chromatin interactive region
|
n/a
|
inside rSNPs
|
diseases
|
| 19 |
esv2761478 |
chr9:1518733-1685649 |
Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS
|
Chromatin interactive regionlncRNA
|
n/a
|
inside rSNPs
|
diseases
|
| 20 |
nsv1028176 |
chr9:1549908-1583224 |
Enhancers ZNF genes & repeats Active TSS Weak transcription
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 21 |
nsv1025086 |
chr9:1554692-1676464 |
Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer
|
Chromatin interactive regionlncRNA
|
n/a
|
inside rSNPs
|
diseases
|
| 22 |
esv3366152 |
chr9:1556001-1583510 |
ZNF genes & repeats Active TSS Weak transcription Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 23 |
nsv892034 |
chr9:1556054-1611081 |
ZNF genes & repeats Enhancers Weak transcription Active TSS
|
Chromatin interactive region
|
n/a
|
inside rSNPs
|
diseases
|
| 24 |
nsv892035 |
chr9:1556054-1823605 |
Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer
|
Chromatin interactive regionlncRNA
|
n/a
|
inside rSNPs
|
diseases
|
| 25 |
esv3428948 |
chr9:1557001-1593153 |
ZNF genes & repeats Active TSS Weak transcription Enhancers
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
| 26 |
esv1284945 |
chr9:1557224-1557225 |
Weak transcription
|
n/a
|
n/a
|
inside rSNPs
|
diseases
|
Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page:
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