Variant report

Variant	rs71516576
Chromosome Location	chr8:10314011-10314012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10107593	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11774170	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11785972	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13248291	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13250363	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13270515	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13272282	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17711111	0.80[EUR][1000 genomes]
rs34552276	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34658842	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34950718	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35088325	0.81[AMR][1000 genomes]
rs35324154	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35505217	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35742317	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35926643	0.88[EUR][1000 genomes]
rs4271011	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4478621	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4538933	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4841339	0.81[AMR][1000 genomes]
rs4841348	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6601464	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6990962	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7014983	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7016808	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71516574	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7819216	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9650623	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9792357	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv890349	chr8:10294330-10355302	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1019090	chr8:10303099-10369061	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1024976	chr8:10303099-10385361	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1030856	chr8:10303099-10439064	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv890350	chr8:10305317-10346588	Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10292200-10321400	Weak transcription	Fetal Brain Male	brain
2	chr8:10304400-10328200	Weak transcription	Fetal Brain Female	brain
3	chr8:10308800-10314800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:10310800-10321000	Weak transcription	Pancreas	Pancrea
5	chr8:10312800-10315000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:10313000-10317400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr8:10313800-10315200	Enhancers	Stomach Mucosa	stomach
8	chr8:10314000-10314600	Enhancers	Adipose Nuclei	Adipose
9	chr8:10314000-10315400	Enhancers	Fetal Lung	lung

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