Variant report

Variant	rs71529177
Chromosome Location	chr8:66562134-66562135
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66560991..66563000-chr8:66576545..66578819,2	MCF-7	breast:
2	chr8:66557149..66559790-chr8:66561450..66563071,2	K562	blood:
3	chr8:66556070..66558331-chr8:66560189..66563116,2	MCF-7	breast:
4	chr8:66543785..66546210-chr8:66562044..66563717,2	K562	blood:
5	chr8:66552932..66555499-chr8:66560225..66562649,2	MCF-7	breast:
6	chr8:66544710..66547024-chr8:66562044..66564223,2	K562	blood:

Variant related genes	Relation type
ENSG00000104442	Chromatin interaction
ENSG00000066855	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1355830	0.86[ASN][1000 genomes]
rs2357474	0.82[ASN][1000 genomes]
rs60662857	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66557800-66564400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:66558000-66564200	Weak transcription	Psoas Muscle	Psoas
3	chr8:66558000-66565000	Weak transcription	Pancreas	Pancrea
4	chr8:66558000-66565200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:66558000-66567000	Weak transcription	Gastric	stomach
6	chr8:66558000-66567200	Weak transcription	Adipose Nuclei	Adipose
7	chr8:66558000-66567400	Weak transcription	Ovary	ovary
8	chr8:66558000-66568800	Weak transcription	Fetal Intestine Small	intestine
9	chr8:66558000-66569400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:66558000-66569600	Weak transcription	Esophagus	oesophagus
11	chr8:66558000-66571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:66558000-66571000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:66558000-66571000	Weak transcription	Fetal Lung	lung
14	chr8:66558000-66571000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:66558000-66571000	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:66558000-66571000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:66558000-66571000	Weak transcription	Thymus	Thymus
18	chr8:66558000-66571000	Weak transcription	HSMMtube	muscle
19	chr8:66558000-66571000	Weak transcription	NH-A	brain
20	chr8:66558000-66571200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:66558000-66571200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:66558000-66571600	Weak transcription	Lung	lung
23	chr8:66558000-66582400	Weak transcription	Placenta	Placenta
24	chr8:66558000-66583400	Weak transcription	Aorta	Aorta
25	chr8:66558000-66585200	Weak transcription	Left Ventricle	heart
26	chr8:66558200-66562200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:66558200-66569600	Weak transcription	Fetal Stomach	stomach
28	chr8:66558200-66570600	Weak transcription	Fetal Intestine Large	intestine
29	chr8:66558200-66570800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:66558200-66570800	Weak transcription	Primary B cells from cord blood	blood
31	chr8:66558200-66570800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr8:66558200-66571000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:66558200-66571000	Weak transcription	HSMM	muscle
34	chr8:66558200-66571200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:66558200-66573600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:66558400-66562200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:66558400-66562600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr8:66558400-66567200	Weak transcription	Stomach Mucosa	stomach
39	chr8:66558400-66567600	Weak transcription	NHDF-Ad	bronchial
40	chr8:66558400-66568800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:66558400-66569400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:66558400-66569800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:66558400-66570000	Weak transcription	Osteobl	bone
44	chr8:66558400-66571000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr8:66558400-66606800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr8:66558600-66564000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr8:66558600-66565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr8:66558600-66566800	Weak transcription	A549	lung
49	chr8:66558600-66567000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:66558600-66569000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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