Variant report

Variant	rs7153074
Chromosome Location	chr14:39770729-39770730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39769729..39772200-chr14:39779673..39781818,3	MCF-7	breast:
2	chr14:39637549..39640263-chr14:39768820..39771005,2	MCF-7	breast:
3	chr14:39644738..39647124-chr14:39769645..39772473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259083	Chromatin interaction
ENSG00000182400	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10137623	0.89[JPT][hapmap]
rs10150967	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622951	0.85[JPT][hapmap]
rs12433610	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12881376	0.86[AFR][1000 genomes]
rs1570131	0.80[ASW][hapmap]
rs1570133	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980609	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1998193	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs2025027	0.89[JPT][hapmap]
rs2025028	0.85[JPT][hapmap]
rs2415546	0.89[ASW][hapmap]
rs28502509	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs35530272	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902459	0.89[ASW][hapmap];0.90[JPT][hapmap]
rs4902469	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6571912	0.90[JPT][hapmap]
rs7141840	0.85[JPT][hapmap]
rs7143942	0.89[ASW][hapmap]
rs7146146	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7153523	0.85[JPT][hapmap]
rs7154632	0.89[ASW][hapmap]
rs8006182	0.89[ASW][hapmap]
rs8018990	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322996	0.85[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr14:39746200-39776600	Weak transcription	K562	blood
3	chr14:39746400-39771200	Weak transcription	Fetal Heart	heart
4	chr14:39749400-39785400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:39749600-39771200	Weak transcription	Fetal Kidney	kidney
6	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
7	chr14:39755400-39775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:39755400-39783400	Strong transcription	Liver	Liver
9	chr14:39755600-39780400	Strong transcription	HepG2	liver
10	chr14:39755600-39797200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:39756000-39788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:39756200-39776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:39756200-39828400	Weak transcription	Brain Germinal Matrix	brain
14	chr14:39756400-39773200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:39756400-39774000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:39756600-39819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:39756800-39771200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:39756800-39797800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr14:39757000-39783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:39757200-39773800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:39757400-39771200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:39757400-39796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:39759400-39801800	Weak transcription	NHLF	lung
25	chr14:39760000-39775800	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:39760800-39771200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:39761000-39775200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr14:39761600-39773400	Strong transcription	Fetal Intestine Large	intestine
29	chr14:39761800-39771800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr14:39762200-39774200	Strong transcription	Duodenum Mucosa	Duodenum
31	chr14:39762400-39801600	Weak transcription	Fetal Brain Male	brain
32	chr14:39762600-39772600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr14:39762600-39774400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:39763200-39772200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:39763400-39771600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:39763400-39772200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr14:39763400-39776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:39763800-39772200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr14:39763800-39772600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:39764000-39786200	Weak transcription	Brain Substantia Nigra	brain
41	chr14:39764400-39785400	Weak transcription	Esophagus	oesophagus
42	chr14:39764600-39771800	Weak transcription	HSMMtube	muscle
43	chr14:39764600-39785600	Weak transcription	Gastric	stomach
44	chr14:39764600-39785600	Weak transcription	Psoas Muscle	Psoas
45	chr14:39764600-39790000	Weak transcription	Fetal Brain Female	brain
46	chr14:39764600-39808200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr14:39764600-39818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:39764800-39771800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr14:39764800-39778200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:39764800-39802400	Weak transcription	Brain Cingulate Gyrus	brain

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