Variant report

Variant	rs7155335
Chromosome Location	chr14:35790399-35790400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35790365..35792681-chr14:35809651..35811760,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSMA6-1	chr14:35789592-35790654	NONHSAT036374

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10047949	0.93[ASN][1000 genomes]
rs10131625	0.93[ASN][1000 genomes]
rs10132920	0.93[ASN][1000 genomes]
rs10134308	0.93[ASN][1000 genomes]
rs10136978	0.93[ASN][1000 genomes]
rs10137019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10142846	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10144857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10146133	0.84[ASN][1000 genomes]
rs10146691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10147645	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10149823	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1064248	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11156874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11844031	0.96[ASN][1000 genomes]
rs11845183	0.96[ASN][1000 genomes]
rs11845364	0.93[ASN][1000 genomes]
rs11848309	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11849461	0.96[ASN][1000 genomes]
rs11851820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11852178	0.96[ASN][1000 genomes]
rs12100582	0.93[ASN][1000 genomes]
rs12100980	0.93[ASN][1000 genomes]
rs12436351	0.96[ASN][1000 genomes]
rs17091807	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17103111	0.93[ASN][1000 genomes]
rs17103147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17103166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17103257	1.00[CEU][hapmap]
rs17386684	0.84[ASN][1000 genomes]
rs17456067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1807162	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1884715	0.89[ASN][1000 genomes]
rs2005535	1.00[CHB][hapmap]
rs2145622	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2277459	0.82[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2277461	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2415278	0.93[ASN][1000 genomes]
rs2415284	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28470932	0.93[ASN][1000 genomes]
rs28504476	0.89[ASN][1000 genomes]
rs28505171	0.86[ASN][1000 genomes]
rs28595436	0.93[ASN][1000 genomes]
rs28665705	0.93[ASN][1000 genomes]
rs28708376	0.93[ASN][1000 genomes]
rs28736779	0.93[ASN][1000 genomes]
rs2899832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs34509212	0.84[ASN][1000 genomes]
rs4494460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs55907319	0.93[ASN][1000 genomes]
rs58064181	0.96[ASN][1000 genomes]
rs60940685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62625039	0.84[ASN][1000 genomes]
rs6571694	0.84[ASN][1000 genomes]
rs6571695	0.84[ASN][1000 genomes]
rs6571709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7148424	0.93[ASN][1000 genomes]
rs7149602	0.93[ASN][1000 genomes]
rs7153807	0.93[ASN][1000 genomes]
rs7154637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs72664840	0.84[ASN][1000 genomes]
rs72664843	0.84[ASN][1000 genomes]
rs72664854	0.84[ASN][1000 genomes]
rs72664855	0.84[ASN][1000 genomes]
rs73239026	0.89[ASN][1000 genomes]
rs73239030	0.89[ASN][1000 genomes]
rs73239072	0.93[ASN][1000 genomes]
rs73239074	0.93[ASN][1000 genomes]
rs73240720	0.96[ASN][1000 genomes]
rs73240721	0.96[ASN][1000 genomes]
rs74043875	0.96[ASN][1000 genomes]
rs743226	0.93[ASN][1000 genomes]
rs743227	0.93[ASN][1000 genomes]
rs7493705	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8004236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8005261	0.96[ASN][1000 genomes]
rs8007822	0.93[ASN][1000 genomes]
rs8009666	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8010905	0.93[ASN][1000 genomes]
rs8011195	0.84[ASN][1000 genomes]
rs8016140	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8019482	0.84[ASN][1000 genomes]
rs8019523	0.84[ASN][1000 genomes]
rs8019700	0.84[ASN][1000 genomes]
rs8019709	0.84[ASN][1000 genomes]
rs876996	1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9646144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35766200-35792000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:35769200-35800800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:35772400-35790400	Weak transcription	Fetal Heart	heart
4	chr14:35775000-35790600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:35778400-35799800	Weak transcription	Stomach Mucosa	stomach
6	chr14:35782600-35795200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:35783400-35800600	Weak transcription	NHEK	skin
8	chr14:35784800-35804600	Weak transcription	Ovary	ovary
9	chr14:35784800-35804600	Weak transcription	Psoas Muscle	Psoas
10	chr14:35785400-35800800	Weak transcription	K562	blood
11	chr14:35787200-35793000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:35787400-35792200	Weak transcription	Fetal Kidney	kidney
13	chr14:35787400-35800800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:35787600-35790400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:35787600-35790600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:35787600-35791800	Weak transcription	Brain Angular Gyrus	brain
17	chr14:35787600-35792400	Weak transcription	Pancreas	Pancrea
18	chr14:35787600-35793200	Weak transcription	HMEC	breast
19	chr14:35787600-35795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:35787600-35800800	Weak transcription	Colonic Mucosa	Colon
21	chr14:35787600-35800800	Weak transcription	Esophagus	oesophagus
22	chr14:35787600-35803200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:35787800-35791600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:35787800-35792200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:35787800-35796200	Weak transcription	Gastric	stomach
26	chr14:35788000-35790800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:35788000-35791000	Weak transcription	Colon Smooth Muscle	Colon
28	chr14:35788000-35791600	Weak transcription	NHLF	lung
29	chr14:35788000-35793000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr14:35788000-35794000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:35788000-35804600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr14:35788200-35792800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr14:35788200-35793400	Weak transcription	NH-A	brain
34	chr14:35788200-35794400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:35788200-35794400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:35788200-35794400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr14:35788200-35800600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:35788200-35800800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:35788200-35801200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr14:35788200-35802200	Weak transcription	NHDF-Ad	bronchial
41	chr14:35788400-35790400	Weak transcription	Right Ventricle	heart
42	chr14:35788400-35791400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:35788400-35791600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:35788400-35791600	Weak transcription	HSMMtube	muscle
45	chr14:35788400-35791800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr14:35788400-35791800	Weak transcription	Brain Germinal Matrix	brain
47	chr14:35788400-35795400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:35788400-35796400	Weak transcription	A549	lung
49	chr14:35788400-35800600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:35788400-35800800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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