Variant report
| Variant | rs71574711 |
|---|---|
| Chromosome Location | chr7:122286573-122286574 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10256337 | 0.89[EUR][1000 genomes] |
| rs10265175 | 0.89[EUR][1000 genomes] |
| rs10268368 | 0.89[EUR][1000 genomes] |
| rs12706427 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12706434 | 1.00[EUR][1000 genomes] |
| rs13221540 | 1.00[EUR][1000 genomes] |
| rs13222266 | 1.00[EUR][1000 genomes] |
| rs13226270 | 1.00[EUR][1000 genomes] |
| rs13226382 | 1.00[EUR][1000 genomes] |
| rs13230792 | 1.00[EUR][1000 genomes] |
| rs13239569 | 1.00[EUR][1000 genomes] |
| rs13247906 | 0.89[EUR][1000 genomes] |
| rs28449483 | 0.89[EUR][1000 genomes] |
| rs28459977 | 0.89[EUR][1000 genomes] |
| rs28550991 | 0.89[EUR][1000 genomes] |
| rs28635203 | 0.87[EUR][1000 genomes] |
| rs34089631 | 1.00[EUR][1000 genomes] |
| rs34125908 | 1.00[EUR][1000 genomes] |
| rs34148286 | 0.89[EUR][1000 genomes] |
| rs34927994 | 1.00[EUR][1000 genomes] |
| rs35186619 | 1.00[EUR][1000 genomes] |
| rs35628062 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35986281 | 0.97[EUR][1000 genomes] |
| rs6466830 | 1.00[EUR][1000 genomes] |
| rs71574712 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71574713 | 1.00[EUR][1000 genomes] |
| rs71574714 | 0.89[EUR][1000 genomes] |
| rs71574716 | 0.89[EUR][1000 genomes] |
| rs7779064 | 0.89[EUR][1000 genomes] |
| rs7789775 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017029 | chr7:121958574-122338623 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv532178 | chr7:122203056-122978846 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv532179 | chr7:122249639-122986259 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv3346852 | chr7:122284241-122287089 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3364968 | chr7:122284516-122286864 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:122269800-122288000 | Weak transcription | HepG2 | liver |
| 2 | chr7:122278600-122288200 | Weak transcription | Gastric | stomach |
