Variant report

Variant	rs7159619
Chromosome Location	chr14:69170063-69170064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69168350..69170772-chr14:69258845..69262134,3	K562	blood:
2	chr14:69168962..69171091-chr14:69172701..69174932,2	MCF-7	breast:
3	chr14:69157276..69160381-chr14:69169108..69171810,3	K562	blood:
4	chr14:69169762..69171613-chr14:69281684..69283717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000242941	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11624763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8008521	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8013046	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69153000-69171400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:69156400-69171400	Weak transcription	Pancreas	Pancrea
3	chr14:69157400-69171400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:69160800-69172000	Weak transcription	Fetal Intestine Small	intestine
5	chr14:69161800-69172000	Weak transcription	Fetal Stomach	stomach
6	chr14:69163200-69171400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:69168600-69170200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:69168800-69170200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:69168800-69170200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:69168800-69170200	Bivalent Enhancer	HepG2	liver
11	chr14:69168800-69170400	Enhancers	Esophagus	oesophagus
12	chr14:69168800-69170600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:69168800-69170800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr14:69168800-69173800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:69168800-69173800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:69168800-69173800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr14:69168800-69173800	Enhancers	HMEC	breast
18	chr14:69168800-69174000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:69168800-69176000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:69169000-69170200	Enhancers	NHLF	lung
21	chr14:69169000-69173600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:69169000-69173800	Enhancers	NHEK	skin
23	chr14:69169200-69170400	Enhancers	Placenta	Placenta
24	chr14:69169200-69170400	Enhancers	A549	lung
25	chr14:69169200-69170400	Enhancers	HUVEC	blood vessel
26	chr14:69169200-69171600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:69169200-69172400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr14:69169200-69175200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:69169400-69170200	Enhancers	Fetal Muscle Trunk	muscle
30	chr14:69169400-69170400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:69169400-69170400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr14:69169400-69170400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr14:69169400-69170400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:69169400-69170400	Enhancers	Hela-S3	cervix
35	chr14:69169400-69170400	Enhancers	K562	blood
36	chr14:69169400-69170600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:69169400-69171600	Enhancers	NHDF-Ad	bronchial
38	chr14:69169400-69172000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr14:69169400-69172200	Enhancers	Osteobl	bone
40	chr14:69169600-69170200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:69169600-69170200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:69169600-69170200	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr14:69169600-69170200	Enhancers	Lung	lung
44	chr14:69169600-69170200	Enhancers	Spleen	Spleen
45	chr14:69169600-69170200	Enhancers	HSMM	muscle
46	chr14:69169600-69170400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr14:69169600-69170400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:69169600-69170600	Enhancers	NH-A	brain
49	chr14:69169800-69170200	Enhancers	Right Ventricle	heart
50	chr14:69169800-69170200	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links