Variant report

Variant	rs11624763
Chromosome Location	chr14:69170351-69170352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69168350..69170772-chr14:69258845..69262134,3	K562	blood:
2	chr14:69168962..69171091-chr14:69172701..69174932,2	MCF-7	breast:
3	chr14:69157276..69160381-chr14:69169108..69171810,3	K562	blood:
4	chr14:69169762..69171613-chr14:69281684..69283717,2	MCF-7	breast:
5	chr14:69170086..69173238-chr14:69180375..69182388,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000242941	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1034485	0.81[ASN][1000 genomes]
rs404539	0.81[ASN][1000 genomes]
rs405329	0.81[ASN][1000 genomes]
rs412016	0.81[ASN][1000 genomes]
rs444883	0.81[ASN][1000 genomes]
rs6573854	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8008521	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013046	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69153000-69171400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:69156400-69171400	Weak transcription	Pancreas	Pancrea
3	chr14:69157400-69171400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:69160800-69172000	Weak transcription	Fetal Intestine Small	intestine
5	chr14:69161800-69172000	Weak transcription	Fetal Stomach	stomach
6	chr14:69163200-69171400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:69168800-69170400	Enhancers	Esophagus	oesophagus
8	chr14:69168800-69170600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:69168800-69170800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr14:69168800-69173800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:69168800-69173800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:69168800-69173800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr14:69168800-69173800	Enhancers	HMEC	breast
14	chr14:69168800-69174000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:69168800-69176000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:69169000-69173600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:69169000-69173800	Enhancers	NHEK	skin
18	chr14:69169200-69170400	Enhancers	Placenta	Placenta
19	chr14:69169200-69170400	Enhancers	A549	lung
20	chr14:69169200-69170400	Enhancers	HUVEC	blood vessel
21	chr14:69169200-69171600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:69169200-69172400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr14:69169200-69175200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:69169400-69170400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:69169400-69170400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr14:69169400-69170400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr14:69169400-69170400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:69169400-69170400	Enhancers	Hela-S3	cervix
29	chr14:69169400-69170400	Enhancers	K562	blood
30	chr14:69169400-69170600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:69169400-69171600	Enhancers	NHDF-Ad	bronchial
32	chr14:69169400-69172000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr14:69169400-69172200	Enhancers	Osteobl	bone
34	chr14:69169600-69170400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr14:69169600-69170400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:69169600-69170600	Enhancers	NH-A	brain
37	chr14:69169800-69170400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr14:69169800-69171400	Weak transcription	Ovary	ovary
39	chr14:69169800-69172200	Weak transcription	Gastric	stomach
40	chr14:69170000-69171000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:69170000-69171000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:69170000-69171200	Weak transcription	Adipose Nuclei	Adipose
43	chr14:69170000-69171400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr14:69170200-69171200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:69170200-69171200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:69170200-69171200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr14:69170200-69171200	Weak transcription	HSMM	muscle
48	chr14:69170200-69171200	Weak transcription	NHLF	lung
49	chr14:69170200-69171400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:69170200-69171400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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