Variant report

Variant	rs1034485
Chromosome Location	chr14:69175778-69175779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69175661..69178437-chr14:69179324..69182008,2	K562	blood:
2	chr14:69175164..69177476-chr14:69251993..69254920,2	MCF-7	breast:
3	chr14:69172247..69173998-chr14:69174200..69176922,2	MCF-7	breast:
4	chr14:69174675..69177475-chr14:69262277..69265148,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11158760	1.00[CEU][hapmap];0.83[AFR][1000 genomes]
rs11624763	0.81[ASN][1000 genomes]
rs168964	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs168965	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs194773	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs194776	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs194781	0.94[CEU][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs194782	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs381336	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs383721	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs387618	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs404539	0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407929	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs408608	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs409633	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs412016	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440489	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs444883	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573854	0.81[ASN][1000 genomes]
rs8008521	0.81[ASN][1000 genomes]
rs8013046	0.81[ASN][1000 genomes]
rs9323519	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69168800-69176000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:69170800-69177200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr14:69171800-69179800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69173200-69178400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:69173400-69176000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:69173400-69179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:69173600-69176200	Weak transcription	Gastric	stomach
8	chr14:69173600-69177600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:69173600-69178000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:69173600-69178400	Weak transcription	Fetal Intestine Large	intestine
11	chr14:69173600-69178800	Weak transcription	Fetal Lung	lung
12	chr14:69173600-69179800	Weak transcription	Right Atrium	heart
13	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
15	chr14:69173800-69175800	Weak transcription	Stomach Mucosa	stomach
16	chr14:69173800-69178000	Weak transcription	Left Ventricle	heart
17	chr14:69173800-69178000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:69173800-69178200	Weak transcription	Spleen	Spleen
19	chr14:69173800-69179000	Weak transcription	Colon Smooth Muscle	Colon
20	chr14:69173800-69180600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:69173800-69180600	Weak transcription	NHEK	skin
22	chr14:69173800-69184200	Weak transcription	Ovary	ovary
23	chr14:69174000-69176200	Weak transcription	Pancreas	Pancrea
24	chr14:69174000-69177200	Weak transcription	Esophagus	oesophagus
25	chr14:69174000-69177400	Weak transcription	Placenta	Placenta
26	chr14:69174000-69177600	Weak transcription	Lung	lung
27	chr14:69174000-69178000	Weak transcription	Fetal Thymus	thymus
28	chr14:69174000-69181600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr14:69174000-69181800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:69174800-69177200	Enhancers	Liver	Liver
31	chr14:69175000-69181600	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links