Variant report

Variant	rs407929
Chromosome Location	chr14:69185656-69185657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69177353..69180926-chr14:69182112..69186555,4	MCF-7	breast:
2	chr14:69181127..69183744-chr14:69184371..69186428,2	K562	blood:
3	chr14:69183888..69188009-chr14:69213725..69217312,4	K562	blood:
4	chr14:69181127..69183610-chr14:69184552..69186676,3	K562	blood:
5	chr14:69185412..69187789-chr14:69192194..69193757,2	MCF-7	breast:
6	chr14:69027252..69028985-chr14:69183923..69186800,2	MCF-7	breast:
7	chr14:69184860..69185740-chr14:69255115..69256218,4	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1034485	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11158760	0.94[CEU][hapmap];0.83[AFR][1000 genomes]
rs168964	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168965	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757282	1.00[JPT][hapmap]
rs194763	1.00[ASW][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs194773	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194776	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194782	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs381336	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383721	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs387618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs404539	0.83[CEU][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs405329	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs408608	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs409633	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412016	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs440489	1.00[ASW][hapmap];0.94[CEU][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs444883	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6573856	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs735292	1.00[JPT][hapmap]
rs9323519	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs957258	0.82[ASW][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
3	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
4	chr14:69180800-69186200	Weak transcription	Primary T cells from cord blood	blood
5	chr14:69180800-69186200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:69181000-69186000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:69181000-69191400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:69181000-69195200	Weak transcription	Spleen	Spleen
9	chr14:69181800-69185800	Enhancers	HepG2	liver
10	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:69182200-69191200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:69184200-69188600	Weak transcription	Placenta	Placenta
13	chr14:69184400-69187600	Weak transcription	Fetal Intestine Small	intestine
14	chr14:69184400-69188400	Weak transcription	Fetal Intestine Large	intestine
15	chr14:69184800-69187000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:69184800-69188800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:69185000-69187200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:69185200-69185800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr14:69185200-69186000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:69185200-69186600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr14:69185200-69186800	Enhancers	K562	blood
22	chr14:69185200-69187000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr14:69185200-69187200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:69185200-69187400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr14:69185400-69187200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr14:69185600-69187200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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