Variant report

Variant	rs194773
Chromosome Location	chr14:69198876-69198877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69195838..69197369-chr14:69197618..69200440,2	K562	blood:
2	chr14:69197485..69199211-chr14:69252753..69254670,2	MCF-7	breast:
3	chr14:69196911..69199506-chr14:69233921..69236013,2	MCF-7	breast:
4	chr14:69196833..69200106-chr14:69259441..69263814,4	K562	blood:
5	chr14:69195777..69198921-chr14:69260739..69263814,4	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1034485	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158760	0.94[CEU][hapmap];0.83[AFR][1000 genomes]
rs168964	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs168965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17757282	1.00[JPT][hapmap]
rs194763	1.00[JPT][hapmap]
rs194776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194781	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs194782	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs381336	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs383721	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs387618	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs404539	0.84[CEU][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs405329	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs407929	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs408608	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs409633	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs412016	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs440489	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs444883	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6573856	1.00[JPT][hapmap]
rs735292	1.00[JPT][hapmap]
rs9323519	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:69187400-69200000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:69187800-69199400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:69193000-69200800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:69194200-69199200	Enhancers	Fetal Muscle Leg	muscle
6	chr14:69194800-69199400	Enhancers	Fetal Heart	heart
7	chr14:69195200-69201600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:69195400-69199800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:69195600-69200200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:69195600-69202800	Weak transcription	Fetal Kidney	kidney
11	chr14:69196000-69200800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:69196200-69200400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:69196400-69200800	Weak transcription	Small Intestine	intestine
14	chr14:69196400-69201600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:69196400-69203600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr14:69196600-69200200	Enhancers	Brain Hippocampus Middle	brain
17	chr14:69196600-69201000	Weak transcription	Fetal Intestine Small	intestine
18	chr14:69196600-69201000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:69196600-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:69196800-69199400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:69196800-69200600	Weak transcription	HUVEC	blood vessel
22	chr14:69196800-69201000	Weak transcription	K562	blood
23	chr14:69197000-69199000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:69197000-69199000	Enhancers	Fetal Stomach	stomach
25	chr14:69197000-69199200	Enhancers	HepG2	liver
26	chr14:69197000-69199400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:69197000-69200000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:69197000-69200000	Weak transcription	Brain Substantia Nigra	brain
29	chr14:69197200-69199000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr14:69197400-69199000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr14:69197400-69201200	Enhancers	Brain Anterior Caudate	brain
32	chr14:69197600-69199000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:69197600-69199800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:69197600-69200000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:69197800-69199000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:69197800-69199800	Weak transcription	Fetal Thymus	thymus
37	chr14:69197800-69200200	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr14:69197800-69202200	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr14:69198000-69199000	Weak transcription	GM12878-XiMat	blood
40	chr14:69198000-69199600	Weak transcription	Primary T cells from cord blood	blood
41	chr14:69198000-69199800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:69198000-69199800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr14:69198000-69200000	Weak transcription	Spleen	Spleen
44	chr14:69198000-69200200	Weak transcription	Right Atrium	heart
45	chr14:69198200-69199800	Weak transcription	Fetal Intestine Large	intestine
46	chr14:69198200-69203000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr14:69198200-69203000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr14:69198400-69199000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:69198400-69199400	Weak transcription	Primary B cells from cord blood	blood
50	chr14:69198400-69199800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links