Variant report

Variant	rs8013046
Chromosome Location	chr14:69163110-69163111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69162107..69163887-chr14:69168012..69169646,2	MCF-7	breast:
2	chr14:69161012..69163527-chr14:69170850..69173022,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1034485	0.81[ASN][1000 genomes]
rs11624763	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404539	0.81[ASN][1000 genomes]
rs405329	0.81[ASN][1000 genomes]
rs412016	0.81[ASN][1000 genomes]
rs444883	0.81[ASN][1000 genomes]
rs6573854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159619	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8008521	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1329	chr14:69142476-69176987	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8013046	ZBTB1	cis	cerebellum	SCAN
rs8013046	MPP5	cis	cerebellum	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69153000-69171400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:69155800-69163600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:69156400-69171400	Weak transcription	Pancreas	Pancrea
4	chr14:69156600-69169400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:69157400-69171400	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:69158600-69163400	Enhancers	NHDF-Ad	bronchial
7	chr14:69158600-69167600	Weak transcription	Primary B cells from cord blood	blood
8	chr14:69159000-69163200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:69159000-69163400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr14:69159200-69163200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:69159400-69163200	Enhancers	Osteobl	bone
12	chr14:69159400-69165000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:69159600-69163200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:69159600-69163200	Enhancers	Hela-S3	cervix
15	chr14:69159600-69163200	Enhancers	NH-A	brain
16	chr14:69159600-69163600	Enhancers	NHLF	lung
17	chr14:69159600-69164000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:69159800-69163800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:69159800-69164200	Enhancers	HMEC	breast
20	chr14:69160200-69163800	Enhancers	Lung	lung
21	chr14:69160600-69163400	Enhancers	HUVEC	blood vessel
22	chr14:69160600-69164400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:69160800-69163800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:69160800-69172000	Weak transcription	Fetal Intestine Small	intestine
25	chr14:69161000-69163200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:69161200-69163800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:69161600-69163200	Enhancers	HSMMtube	muscle
28	chr14:69161600-69169000	Weak transcription	Gastric	stomach
29	chr14:69161600-69169800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:69161800-69166600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:69161800-69169600	Weak transcription	Adipose Nuclei	Adipose
32	chr14:69161800-69172000	Weak transcription	Fetal Stomach	stomach
33	chr14:69162000-69163800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:69162000-69163800	Enhancers	HSMM	muscle
35	chr14:69162000-69163800	Enhancers	NHEK	skin
36	chr14:69162600-69164000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69162600-69165000	Weak transcription	Stomach Mucosa	stomach
38	chr14:69162600-69165800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr14:69162600-69167600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:69162600-69168800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:69162600-69168800	Weak transcription	Ovary	ovary
42	chr14:69162800-69163600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr14:69162800-69168800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr14:69162800-69168800	Weak transcription	Esophagus	oesophagus
45	chr14:69162800-69169400	Weak transcription	K562	blood
46	chr14:69162800-69169600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:69163000-69163200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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