Variant report

Variant	rs71605122
Chromosome Location	chr4:97443854-97443855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13113326	0.81[EUR][1000 genomes]
rs13126115	0.85[EUR][1000 genomes]
rs1506313	0.81[EUR][1000 genomes]
rs17025643	0.85[EUR][1000 genomes]
rs17025657	0.85[EUR][1000 genomes]
rs17444761	0.81[EUR][1000 genomes]
rs34023952	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34119016	0.81[EUR][1000 genomes]
rs34141322	0.81[EUR][1000 genomes]
rs34278467	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34373785	0.81[EUR][1000 genomes]
rs34383892	0.85[EUR][1000 genomes]
rs34849264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34888483	0.81[EUR][1000 genomes]
rs35070094	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35565557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35729338	0.81[EUR][1000 genomes]
rs36139966	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699511	0.81[EUR][1000 genomes]
rs71603299	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97442400-97446400	Weak transcription	Dnd41	blood
2	chr4:97442800-97446000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:97443600-97445000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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