Variant report

Variant	rs34888483
Chromosome Location	chr4:97270255-97270256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1073698	0.83[EUR][1000 genomes]
rs13113326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13117642	0.94[EUR][1000 genomes]
rs13131822	0.94[EUR][1000 genomes]
rs13135801	0.91[EUR][1000 genomes]
rs1506313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17444761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17446338	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2865737	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34023952	0.94[EUR][1000 genomes]
rs34119016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34141322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34278467	0.87[EUR][1000 genomes]
rs34740258	0.91[EUR][1000 genomes]
rs34849264	0.81[EUR][1000 genomes]
rs34900499	0.91[EUR][1000 genomes]
rs34987374	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35070094	0.94[EUR][1000 genomes]
rs35565557	0.81[EUR][1000 genomes]
rs35729338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35904110	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36139966	0.87[EUR][1000 genomes]
rs4699284	0.91[EUR][1000 genomes]
rs4699497	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4699511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57096929	0.91[EUR][1000 genomes]
rs71603287	0.91[EUR][1000 genomes]
rs71603291	0.91[EUR][1000 genomes]
rs71603295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71603297	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71603299	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71605122	0.81[EUR][1000 genomes]
rs7682919	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97262800-97270400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:97265200-97273200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:97266200-97273000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:97270200-97272800	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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