Variant report
| Variant | rs2865737 |
|---|---|
| Chromosome Location | chr4:97278572-97278573 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1073698 | 0.86[EUR][1000 genomes] |
| rs13113326 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13117642 | 0.85[EUR][1000 genomes] |
| rs13131822 | 0.85[EUR][1000 genomes] |
| rs13135801 | 0.82[EUR][1000 genomes] |
| rs1506313 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17444761 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17446338 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34023952 | 0.85[EUR][1000 genomes] |
| rs34119016 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34141322 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34740258 | 0.82[EUR][1000 genomes] |
| rs34888483 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34900499 | 0.82[EUR][1000 genomes] |
| rs34987374 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35070094 | 0.85[EUR][1000 genomes] |
| rs35729338 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs35904110 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4699284 | 0.82[EUR][1000 genomes] |
| rs4699497 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4699511 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs57096929 | 0.82[EUR][1000 genomes] |
| rs71603287 | 0.82[EUR][1000 genomes] |
| rs71603291 | 0.82[EUR][1000 genomes] |
| rs71603295 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs71603297 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71603299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7682919 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470057 | chr4:97104880-97311657 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv461589 | chr4:97104881-97311657 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv594916 | chr4:97104881-97311657 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879632 | chr4:97118539-97308914 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97274000-97284600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr4:97277400-97278600 | Weak transcription | Dnd41 | blood |
| 3 | chr4:97278200-97278600 | Enhancers | Fetal Kidney | kidney |
