Variant report

Variant	rs34740258
Chromosome Location	chr4:97137734-97137735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1073698	0.91[EUR][1000 genomes]
rs13113326	0.91[EUR][1000 genomes]
rs13117642	0.97[EUR][1000 genomes]
rs13131822	0.97[EUR][1000 genomes]
rs13135801	1.00[EUR][1000 genomes]
rs1506313	0.91[EUR][1000 genomes]
rs17444761	0.91[EUR][1000 genomes]
rs17446338	0.82[EUR][1000 genomes]
rs2865737	0.82[EUR][1000 genomes]
rs34119016	0.91[EUR][1000 genomes]
rs34141322	0.91[EUR][1000 genomes]
rs34888483	0.91[EUR][1000 genomes]
rs34900499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34987374	0.88[EUR][1000 genomes]
rs35729338	0.91[EUR][1000 genomes]
rs4699284	1.00[EUR][1000 genomes]
rs4699497	0.94[EUR][1000 genomes]
rs4699511	0.91[EUR][1000 genomes]
rs57096929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71603287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71603291	1.00[EUR][1000 genomes]
rs71603295	0.91[EUR][1000 genomes]
rs71603297	0.82[EUR][1000 genomes]
rs71603299	0.91[EUR][1000 genomes]
rs7682919	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97137600-97138600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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