Variant report

Variant	rs71603297
Chromosome Location	chr4:97256101-97256102
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1073698	0.86[EUR][1000 genomes]
rs13113326	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13117642	0.85[EUR][1000 genomes]
rs13131822	0.85[EUR][1000 genomes]
rs13135801	0.82[EUR][1000 genomes]
rs1506313	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17444761	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17446338	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2865737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34023952	0.85[EUR][1000 genomes]
rs34119016	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34141322	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34740258	0.82[EUR][1000 genomes]
rs34888483	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34900499	0.82[EUR][1000 genomes]
rs34987374	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35070094	0.85[EUR][1000 genomes]
rs35729338	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35904110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699284	0.82[EUR][1000 genomes]
rs4699497	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4699511	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57096929	0.82[EUR][1000 genomes]
rs71603287	0.82[EUR][1000 genomes]
rs71603291	0.82[EUR][1000 genomes]
rs71603295	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71603299	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7682919	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv461590	chr4:97197036-97266060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv594917	chr4:97197036-97266060	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97252400-97263200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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