Variant report

Variant	rs13135801
Chromosome Location	chr4:97181118-97181119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1073698	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13113326	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13117642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13131822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1506313	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17444761	0.91[EUR][1000 genomes]
rs17446338	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2865737	0.82[EUR][1000 genomes]
rs34023952	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34119016	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34141322	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34740258	1.00[EUR][1000 genomes]
rs34888483	0.91[EUR][1000 genomes]
rs34900499	1.00[EUR][1000 genomes]
rs34987374	0.88[EUR][1000 genomes]
rs35070094	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35729338	0.91[EUR][1000 genomes]
rs4699284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699497	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4699511	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs57096929	1.00[EUR][1000 genomes]
rs60902288	1.00[AFR][1000 genomes]
rs71603287	1.00[EUR][1000 genomes]
rs71603291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71603295	0.91[EUR][1000 genomes]
rs71603297	0.82[EUR][1000 genomes]
rs71603299	0.91[EUR][1000 genomes]
rs7682919	0.82[EUR][1000 genomes]
rs9686048	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97172200-97183200	Weak transcription	Gastric	stomach
2	chr4:97176600-97181200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:97181000-97182600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:97181000-97184200	Enhancers	HUES48 Cell Line	embryonic stem cell

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