Variant report

Variant	rs34023952
Chromosome Location	chr4:97407523-97407524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13113326	0.94[EUR][1000 genomes]
rs13117642	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13131822	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13135801	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1506313	0.94[EUR][1000 genomes]
rs17444761	0.94[EUR][1000 genomes]
rs17446338	0.85[EUR][1000 genomes]
rs2865737	0.85[EUR][1000 genomes]
rs34119016	0.94[EUR][1000 genomes]
rs34141322	0.94[EUR][1000 genomes]
rs34278467	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34849264	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34888483	0.94[EUR][1000 genomes]
rs34987374	0.85[EUR][1000 genomes]
rs35070094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35565557	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35729338	0.94[EUR][1000 genomes]
rs35904110	0.80[EUR][1000 genomes]
rs36139966	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699284	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4699497	0.91[EUR][1000 genomes]
rs4699511	0.94[EUR][1000 genomes]
rs71603291	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71603295	0.94[EUR][1000 genomes]
rs71603297	0.85[EUR][1000 genomes]
rs71603299	0.94[EUR][1000 genomes]
rs71605121	0.81[EUR][1000 genomes]
rs71605122	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7682919	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97407400-97408200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:97407400-97408200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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