Variant report

Variant	rs17446338
Chromosome Location	chr4:97311707-97311708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:97309756..97312086-chr4:97312168..97315056,2	MCF-7	breast:
2	chr4:97310863..97313458-chr4:97314479..97317370,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1073698	0.86[EUR][1000 genomes]
rs13113326	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13117642	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13126115	0.90[AMR][1000 genomes]
rs13131822	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13135801	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1506313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17025643	0.90[AMR][1000 genomes]
rs17025657	0.81[AMR][1000 genomes]
rs17444761	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2865737	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34023952	0.85[EUR][1000 genomes]
rs34119016	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34141322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34383892	0.90[AMR][1000 genomes]
rs34740258	0.82[EUR][1000 genomes]
rs34888483	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34900499	0.82[EUR][1000 genomes]
rs34987374	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35070094	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35729338	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35904110	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699284	0.82[EUR][1000 genomes]
rs4699497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4699511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57096929	0.82[EUR][1000 genomes]
rs60167560	0.92[AFR][1000 genomes]
rs60902288	0.84[AFR][1000 genomes]
rs61659889	0.92[AFR][1000 genomes]
rs6830272	0.92[AFR][1000 genomes]
rs6835680	0.92[AFR][1000 genomes]
rs71603287	0.82[EUR][1000 genomes]
rs71603291	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71603295	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71603297	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71603299	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7682919	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9686048	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011487	chr4:97301762-97393803	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009685	chr4:97308301-97392056	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97310400-97312200	Enhancers	Dnd41	blood

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