Variant report

Variant	rs7162179
Chromosome Location	chr15:92741441-92741442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11858064	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs60040055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168143	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7172911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7176534	1.00[EUR][1000 genomes]
rs7182998	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7183769	1.00[EUR][1000 genomes]
rs73546333	1.00[EUR][1000 genomes]
rs73546334	1.00[EUR][1000 genomes]
rs73546337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546340	1.00[EUR][1000 genomes]
rs73546342	1.00[EUR][1000 genomes]
rs73546366	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92740800-92741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:92740800-92742000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:92741200-92744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:92741400-92748200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:92741400-92748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:92741400-92748400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:92741400-92748600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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