Variant report
| Variant | rs7172911 |
|---|---|
| Chromosome Location | chr15:92785645-92785646 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:92784812..92787791-chr17:80709416..80711350,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000141556 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11858064 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16946515 | 0.85[ASN][1000 genomes] |
| rs16946538 | 0.94[ASN][1000 genomes] |
| rs16946552 | 0.82[ASN][1000 genomes] |
| rs16946577 | 0.83[ASN][1000 genomes] |
| rs17645517 | 1.00[ASN][1000 genomes] |
| rs4635293 | 0.83[ASN][1000 genomes] |
| rs57510586 | 0.94[ASN][1000 genomes] |
| rs60040055 | 1.00[EUR][1000 genomes] |
| rs61128186 | 1.00[ASN][1000 genomes] |
| rs61319661 | 0.82[ASN][1000 genomes] |
| rs7162179 | 1.00[EUR][1000 genomes] |
| rs7165788 | 0.84[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs7168143 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7172650 | 0.92[ASN][1000 genomes] |
| rs7176534 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7179984 | 0.82[ASN][1000 genomes] |
| rs7181306 | 1.00[ASN][1000 genomes] |
| rs7182998 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7183769 | 1.00[EUR][1000 genomes] |
| rs73546333 | 1.00[EUR][1000 genomes] |
| rs73546334 | 1.00[EUR][1000 genomes] |
| rs73546337 | 1.00[EUR][1000 genomes] |
| rs73546340 | 1.00[EUR][1000 genomes] |
| rs73546342 | 1.00[EUR][1000 genomes] |
| rs73546366 | 1.00[EUR][1000 genomes] |
| rs8036116 | 0.96[ASN][1000 genomes] |
| rs8037526 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948621 | chr15:92688981-93158095 | Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1049561 | chr15:92758434-93097965 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
